GUI 2.0 build December 29, 2011
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the current release of the AutoSOME package. This software is coded in Java to facilitate platform independence and has been tested on Windows, Mac and Linux systems.
Fixes/changes:
GUI: removed substance.jar dependency due to loss of support. Now employing "Nimbus" look & feel, which has been supported since the Java SE 6 update 10 release. For users with an earlier version of Java, the GUI will activate a system-specific look & feel.
Fuzzy clustering: removed duplicate edges from the "_Edges.txt" file to reduce file size and rendering time; now only one unique edge per node pair will be written to the output. This will not change fuzzy cluster behavior since duplicate edges were equally weighted.
Command line: In previous versions, the -u argument for invoking sum of squares=1 normalization was erroneously invoking median centering normalization. This bug has been fixed.
Previous Releases
release_032511
(GUI build March 25, 2011)
Fixed following bugs in the command line version:
-AutoSOME hanged after clustering finished.
-Crashed if input over 1000 lines.
fixed file separator issue for non-Windows systems.
release_090910
(GUI build September 09, 2010)
The AutoSOME GUI has graduated to version 2.0! Several major changes have been made:
Added
Cluster Analysis
field to easily switch among clustering rows, columns, or both rows and columns in a single step.
AutoSOME now offers a data filtration option (invoked upon loading input)
Can now display original data in heat map in addition to normalized data. Go to View>settings>image settings to control this new feature.
Easily resize heat map to fit within display window. Either right-click your mouse when hovering over the heat map, or go to View>fit to screen.
Input file loading speed and memory usage have been vastly improved.
New splash screen!
release_072210
(GUI build July 22, 2010)
Improved heat map display
Added back memory-saving option to write intermediate ensemble runs to disk (see
memory
in
manual
)
release_050410
(GUI build May 04, 2010)
Major improvements made to memory usage
Added color bar to heat map view
Better heat map rendering
release_040110
(GUI build April 01, 2010)
Significant improvements to layout and functionality of
pixel settings
; e.g. can now adjust height of signal plots
pixel settings
window renamed to
image settings
and moved to
view>settings
in menubar
Improved rendering of large images
Replaced image with table display for raw data
release_020910
(GUI build February 09, 2010)
folders are now visible when exporting clusters to graphics/text
heatmap now displays properly after opening results from saved run
release_120909
(GUI build December 09, 2009)
improved missing/null value detection
more warning/information messages
fixed
Write Ensemble to Disk
to work on Macs
release_120109
(GUI build December 01, 2009)
release_111709
(GUI build November 17, 2009)